Iros Barozzi: search on Z-Library

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1

Progressive Loss of Function in a Limb Enhancer during Snake Evolution

Kvon, Evgeny Z., Kamneva, Olga K., Melo, Uirá S., Barozzi, Iros, Osterwalder, Marco, Mannion, Brandon J., Tissières, Virginie, Pickle, Catherine S., Plajzer-Frick, Ingrid, Lee, Elizabeth A., Kato, Mom

Journal:

Year:

2016

Language:

english

File:

PDF, 3.92 MB

english, 2016

2

Latent Enhancers Activated by Stimulation in Differentiated Cells

Ostuni, Renato, Piccolo, Viviana, Barozzi, Iros, Polletti, Sara, Termanini, Alberto, Bonifacio, Silvia, Curina, Alessia, Prosperini, Elena, Ghisletti, Serena, Natoli, Gioacchino

Journal:

Year:

2013

Language:

english

File:

PDF, 2.82 MB

english, 2013

3

Ultraconserved Enhancers Are Required for Normal Development

Dickel, Diane E., Ypsilanti, Athena R., Pla, Ramón, Zhu, Yiwen, Barozzi, Iros, Mannion, Brandon J., Khin, Yupar S., Fukuda-Yuzawa, Yoko, Plajzer-Frick, Ingrid, Pickle, Catherine S., Lee, Elizabeth A.,

Journal:

Year:

2018

Language:

english

File:

PDF, 6.51 MB

english, 2018

4

An atlas of dynamic chromatin landscapes in mouse fetal development

Gorkin, David U., Barozzi, Iros, Zhao, Yuan, Zhang, Yanxiao, Huang, Hui, Lee, Ah Young, Li, Bin, Chiou, Joshua, Wildberg, Andre, Ding, Bo, Zhang, Bo, Wang, Mengchi, Strattan, J. Seth, Davidson, Jean M

Journal:

Year:

2020

File:

PDF, 11.09 MB

2020

5

Differential epigenetic reprogramming in response to specific endocrine therapies promotes cholesterol biosynthesis and cellular invasion

Nguyen, Van T. M., Barozzi, Iros, Faronato, Monica, Lombardo, Ylenia, Steel, Jennifer H., Patel, Naina, Darbre, Philippa, Castellano, Leandro, Győrffy, Balázs, Woodley, Laura, Meira, Alba, Patten, Dar

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 2.27 MB

english, 2015

6

Genome-wide compendium and functional assessment of in vivo heart enhancers

Dickel, Diane E., Barozzi, Iros, Zhu, Yiwen, Fukuda-Yuzawa, Yoko, Osterwalder, Marco, Mannion, Brandon J., May, Dalit, Spurrell, Cailyn H., Plajzer-Frick, Ingrid, Pickle, Catherine S., Lee, Elizabeth,

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.15 MB

english, 2016

7

Exploiting evolutionary steering to induce collateral drug sensitivity in cancer

Acar, Ahmet, Nichol, Daniel, Fernandez-Mateos, Javier, Cresswell, George D., Barozzi, Iros, Hong, Sung Pil, Trahearn, Nicholas, Spiteri, Inmaculada, Stubbs, Mark, Burke, Rosemary, Stewart, Adam, Carav

Journal:

Nature Communications

Year:

2020

File:

PDF, 8.83 MB

2020

8

A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

De Santa, Francesca, Barozzi, Iros, Mietton, Flore, Ghisletti, Serena, Polletti, Sara, Tusi, Betsabeh Khoramian, Muller, Heiko, Ragoussis, Jiannis, Wei, Chia-Lin, Natoli, Gioacchino, Mattick, John S.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.04 MB

english, 2010

9

A dual cis -regulatory code links IRF8 to constitutive and inducible gene expression in macrophages

Mancino, Alessandra, Termanini, Alberto, Barozzi, Iros, Ghisletti, Serena, Ostuni, Renato, Prosperini, Elena, Ozato, Keiko, Natoli, Gioacchino

Journal:

Genes & Development

Year:

2015

Language:

english

File:

PDF, 1.88 MB

english, 2015

10

Evolution of Advanced Chronic Lymphoid Leukemia Unveiled by Single-Cell Transcriptomics: A Case Report

Ostasov, Pavel, Robertson, Henry, Piazza, Paolo, Datta, Avik, Apperley, Jane, Houdova, Lucie, Lysak, Daniel, Holubova, Monika, Tesarova, Katerina, Caputo, Valentina S., Barozzi, Iros

Journal:

Frontiers in Oncology

Year:

2020

File:

PDF, 2.14 MB

2020

11

High-resolution label-free 3D mapping of extracellular pH of single living cells

Zhang, Yanjun, Takahashi, Yasufumi, Hong, Sung Pil, Liu, Fengjie, Bednarska, Joanna, Goff, Philip S., Novak, Pavel, Shevchuk, Andrew, Gopal, Sahana, Barozzi, Iros, Magnani, Luca, Sakai, Hideki, Suguru

Journal:

Nature Communications

Year:

2019

File:

PDF, 1.88 MB

2019

12

Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development

Gorkin, David U., Barozzi, Iros, Zhao, Yuan, Zhang, Yanxiao, Huang, Hui, Lee, Ah Young, Li, Bin, Chiou, Joshua, Wildberg, Andre, Ding, Bo, Zhang, Bo, Wang, Mengchi, Strattan, J. Seth, Davidson, Jean M

Journal:

Year:

2020

File:

PDF, 672 KB

2020

13

Transcription of Mammalian cis-Regulatory Elements Is Restrained by Actively Enforced Early Termination

Austenaa, Liv M.I., Barozzi, Iros, Simonatto, Marta, Masella, Silvia, Della Chiara, Giulia, Ghisletti, Serena, Curina, Alessia, de Wit, Elzo, Bouwman, Britta A.M., de Pretis, Stefano, Piccolo, Viviana

Journal:

Year:

2015

Language:

english

File:

PDF, 5.56 MB

english, 2015

14

Non-coding transcription at cis-regulatory elements: Computational and experimental approaches

Simonatto, Marta, Barozzi, Iros, Natoli, Gioacchino

Journal:

Year:

2013

Language:

english

File:

PDF, 802 KB

english, 2013

15

Comparative evaluation of DNase-seq footprint identification strategies

Barozzi, Iros, Bora, Pranami, Morelli, Marco J.

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 4.36 MB

english, 2014

16

TET2 Regulates Mast Cell Differentiation and Proliferation through Catalytic and Non-catalytic Activities

Montagner, Sara, Leoni, Cristina, Emming, Stefan, Della Chiara, Giulia, Balestrieri, Chiara, Barozzi, Iros, Piccolo, Viviana, Togher, Susan, Ko, Myunggon, Rao, Anjana, Natoli, Gioacchino, Monticelli,

Journal:

Year:

2016

Language:

english

File:

PDF, 4.55 MB

english, 2016

17

Noncoding deletions reveal a gene that is critical for intestinal function

Oz-Levi, Danit, Olender, Tsviya, Bar-Joseph, Ifat, Zhu, Yiwen, Marek-Yagel, Dina, Barozzi, Iros, Osterwalder, Marco, Alkelai, Anna, Ruzzo, Elizabeth K., Han, Yujun, Vos, Erica S. M., Reznik-Wolf, Haik

Journal:

Year:

2019

Language:

english

File:

PDF, 7.34 MB

english, 2019

18

The Histone Methyltransferase Wbp7 Controls Macrophage Function through GPI Glycolipid Anchor Synthesis

Liv Austenaa, Iros Barozzi, Agnieszka Chronowska, Alberto Termanini, Renato Ostuni, Elena Prosperini, A. Francis Stewart, Giuseppe Testa, Gioacchino Natoli

Journal:

Year:

2012

Language:

english

File:

PDF, 2.07 MB

english, 2012

19

Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb

Monti, Remo, Barozzi, Iros, Osterwalder, Marco, Lee, Elizabeth, Kato, Momoe, Garvin, Tyler H., Plajzer-Frick, Ingrid, Pickle, Catherine S., Akiyama, Jennifer A., Afzal, Veena, Beerenwinkel, Niko, Dick

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 5.24 MB

english, 2017

20

Identification and Characterization of Enhancers Controlling the Inflammatory Gene Expression Program in Macrophages

Serena Ghisletti, Iros Barozzi, Flore Mietton, Sara Polletti, Francesca De Santa, Elisa Venturini, Lorna Gregory, Lorne Lonie, Adeline Chew, Chia-Lin Wei, Jiannis Ragoussis, Gioacchino Natoli

Journal:

Year:

2010

Language:

english

File:

PDF, 1.43 MB

english, 2010

21

Coregulation of Transcription Factor Binding and Nucleosome Occupancy through DNA Features of Mammalian Enhancers

Barozzi, Iros, Simonatto, Marta, Bonifacio, Silvia, Yang, Lin, Rohs, Remo, Ghisletti, Serena, Natoli, Gioacchino

Journal:

Year:

2014

Language:

english

File:

PDF, 4.31 MB

english, 2014

22

Targeting the scaffolding role of LSD1 (KDM1A) poises acute myeloid leukemia cells for retinoic acidâinduced differentiation

Ravasio, Roberto, Ceccacci, Elena, Nicosia, Luciano, Hosseini, Amir, Rossi, Pier Luigi, Barozzi, Iros, Fornasari, Lorenzo, Zuffo, Roberto Dal, Valente, Sergio, Fioravanti, Rossella, Mercurio, Ciro, Va

Journal:

Science Advances

Year:

2020

File:

PDF, 8.08 MB

2020

23

Corrigendum: Acquired CYP19A1 amplification is an early specific mechanism of aromatase inhibitor resistance in ERα metastatic breast cancer

Magnani, Luca, Frigè, Gianmaria, Gadaleta, Raffaella Maria, Corleone, Giacomo, Fabris, Sonia, Kempe, Mannus H, Vershure, Pernette J, Barozzi, Iros, Vircillo, Valentina, Hong, Sung-Pil, Perone, Ylenia,

Journal:

Nature Genetics

Year:

2017

Language:

english

File:

PDF, 60 KB

english, 2017

24

Supervised enhancer prediction with epigenetic pattern recognition and targeted validation

Sethi, Anurag, Gu, Mengting, Gumusgoz, Emrah, Chan, Landon, Yan, Koon-Kiu, Rozowsky, Joel, Barozzi, Iros, Afzal, Veena, Akiyama, Jennifer A., Plajzer-Frick, Ingrid, Yan, Chengfei, Novak, Catherine S.,

Journal:

Year:

2020

File:

PDF, 5.27 MB

2020

25

Polycomb-Dependent H3K27me1 and H3K27me2 Regulate Active Transcription and Enhancer Fidelity

Ferrari, Karin J., Scelfo, Andrea, Jammula, SriGanesh, Cuomo, Alessandro, Barozzi, Iros, Stützer, Alexandra, Fischle, Wolfgang, Bonaldi, Tiziana, Pasini, Diego

Journal:

Year:

2014

Language:

english

File:

PDF, 2.55 MB

english, 2014

26

Redox-Mediated Suberoylanilide Hydroxamic Acid Sensitivity in Breast Cancer

Chiaradonna, Ferdinando, Barozzi, Iros, Miccolo, Claudia, Bucci, Gabriele, Palorini, Roberta, Fornasari, Lorenzo, Botrugno, Oronza A., Pruneri, Giancarlo, Masullo, Michele, Passafaro, Alfonso, Galimbe

Journal:

Antioxidants & Redox Signaling

Year:

2015

Language:

english

File:

PDF, 1.65 MB

english, 2015

27

Corrigendum: Comparative evaluation of DNase-seq footprint identification strategies

Barozzi, Iros, Bora, Pranami, Morelli, Marco J.

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 1.17 MB

english, 2014

28

Acquired CYP19A1 amplification is an early specific mechanism of aromatase inhibitor resistance in ERα metastatic breast cancer

Magnani, Luca, Frigè, Gianmaria, Gadaleta, Raffaella Maria, Corleone, Giacomo, Fabris, Sonia, Kempe, Hermannus, Verschure, Pernette J, Barozzi, Iros, Vircillo, Valentina, Hong, Sung-Pil, Perone, Yleni

Journal:

Nature Genetics

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

29

HAND2 Target Gene Regulatory Networks Control Atrioventricular Canal and Cardiac Valve Development

Laurent, Frédéric, Girdziusaite, Ausra, Gamart, Julie, Barozzi, Iros, Osterwalder, Marco, Akiyama, Jennifer A., Lincoln, Joy, Lopez-Rios, Javier, Visel, Axel, Zuniga, Aimée, Zeller, Rolf

Journal:

Year:

2017

Language:

english

File:

PDF, 5.33 MB

english, 2017

30

Single-cell transcriptomics reveals multi-step adaptations to endocrine therapy

Hong, Sung Pil, Chan, Thalia E., Lombardo, Ylenia, Corleone, Giacomo, Rotmensz, Nicole, Bravaccini, Sara, Rocca, Andrea, Pruneri, Giancarlo, McEwen, Kirsten R., Coombes, R. Charles, Barozzi, Iros, Mag

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 5.32 MB

english, 2019

31

High constitutive activity of a broad panel of housekeeping and tissue-specific cis -regulatory elements depends on a subset of ETS proteins

Curina, Alessia, Termanini, Alberto, Barozzi, Iros, Prosperini, Elena, Simonatto, Marta, Polletti, Sara, Silvola, Alessio, Soldi, Monica, Austenaa, Liv, Bonaldi, Tiziana, Ghisletti, Serena, Natoli, Gi

Journal:

Genes & Development

Year:

2017

Language:

english

File:

PDF, 2.05 MB

english, 2017

32

Enhancer mapping uncovers phenotypic heterogeneity and evolution in patients with luminal breast cancer

Patten, Darren K., Corleone, Giacomo, Győrffy, Balázs, Perone, Ylenia, Slaven, Neil, Barozzi, Iros, Erdős, Edina, Saiakhova, Alina, Goddard, Kate, Vingiani, Andrea, Shousha, Sami, Pongor, Lőrinc Sándo

Journal:

Nature Medicine

Year:

2018

Language:

english

File:

PDF, 4.31 MB

english, 2018

33

Author Correction: Differential epigenetic reprogramming in response to specific endocrine therapies promotes cholesterol biosynthesis and cellular invasion

Nguyen, Van T. M., Barozzi, Iros, Faronato, Monica, Lombardo, Ylenia, Steel, Jennifer H., Patel, Naina, Darbre, Philippa, Castellano, Leandro, Győrffy, Balázs, Woodley, Laura, Rodriguez-Meira, Alba, P

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 238 KB

english, 2019

34

Distal Limb Patterning Requires Modulation of cis -Regulatory Activities by HOX13

Sheth, Rushikesh, Barozzi, Iros, Langlais, David, Osterwalder, Marco, Nemec, Stephen, Carlson, Hanqian L., Stadler, H. Scott, Visel, Axel, Drouin, Jacques, Kmita, Marie

Journal:

Year:

2016

Language:

english

File:

PDF, 4.92 MB

english, 2016

35

Enhancer redundancy provides phenotypic robustness in mammalian development

Osterwalder, Marco, Barozzi, Iros, Tissières, Virginie, Fukuda-Yuzawa, Yoko, Mannion, Brandon J., Afzal, Sarah Y., Lee, Elizabeth A., Zhu, Yiwen, Plajzer-Frick, Ingrid, Pickle, Catherine S., Kato, Mom

Journal:

Year:

2018

Language:

english

File:

PDF, 13.88 MB

english, 2018

36

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data

Iros Barozzi, Alberto Termanini, Saverio Minucci, Gioacchino Natoli

Journal:

Year:

2011

Language:

english

File:

PDF, 375 KB

english, 2011

37

Transcript Dynamics of Proinflammatory Genes Revealed by Sequence Analysis of Subcellular RNA Fractions

Dev M. Bhatt, Amy Pandya-Jones, Ann-Jay Tong, Iros Barozzi, Michelle M. Lissner, Gioacchino Natoli, Douglas L. Black, Stephen T. Smale

Journal:

Year:

2012

Language:

english

File:

PDF, 1.22 MB

english, 2012

38

Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes

Zhan, Yinxiu, Mariani, Luca, Barozzi, Iros, Schulz, Edda G., Blüthgen, Nils, Stadler, Michael, Tiana, Guido, Giorgetti, Luca

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 1.45 MB

english, 2017

39

Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures

Comoglio, Federico, Park, Hyun Jung, Schoenfelder, Stefan, Barozzi, Iros, Bode, Daniel, Fraser, Peter, Green, Anthony R

Journal:

Genome Research

Year:

2018

Language:

english

File:

PDF, 4.95 MB

english, 2018

40

Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue

Fanelli, Mirco, Amatori, Stefano, Barozzi, Iros, Minucci, Saverio

Journal:

Nature Protocols

Year:

2011

Language:

english

File:

PDF, 938 KB

english, 2011

41

TET2 Regulates Mast Cell Differentiation and Proliferation through Catalytic and Non-catalytic Activities

Montagner, Sara, Leoni, Cristina, Emming, Stefan, Della Chiara, Giulia, Balestrieri, Chiara, Barozzi, Iros, Piccolo, Viviana, Togher, Susan, Ko, Myunggon, Rao, Anjana, Natoli, Gioacchino, Monticelli,

Journal:

Year:

2017

File:

PDF, 99 KB

2017

42

Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation

Cuartero, Sergi, Weiss, Felix D., Dharmalingam, Gopuraja, Guo, Ya, Ing-Simmons, Elizabeth, Masella, Silvia, Robles-Rebollo, Irene, Xiao, Xiaolin, Wang, Yi-Fang, Barozzi, Iros, Djeghloul, Dounia, Amano

Journal:

Nature Immunology

Year:

2018

Language:

english

File:

PDF, 2.21 MB

english, 2018

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